Here you can download key datasets and resources from the PlantConnectome database.
Knowledge graph used to construct the Connectome.
Download file| source | source type | relationship | target | target type | gene | pubmedID | p_source | species | basis | source_extracted_definition | source_generated_definition | target_extracted_definition | target_generated_definition | source type resolved | target type resolved | source resolved | target resolved | relationship resolved | source gene alias | target gene alias |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SUCROSE TRANSPORTER 5 | gene | supplies | A. thaliana embryos | organism | BIO2 | 23031218 | 23031218_abstract | Arabidopsis thaliana | Uptake measurements of radiolabelled biotin in suc5 mutants | A gene encoding a transporter that facilitates the movement of sucrose and biotin. | NaN | Embryos from the plant species Arabidopsis thaliana, used in genetic studies. | NaN | gene | organism | SUCROSE TRANSPORTER 5 | A. thaliana embryo | supplies | NaN | NaN |
| SUCROSE TRANSPORTER 5 | gene | affect | Triacylglycerol accumulation | phenotype | BIO2 | 23031218 | 23031218_abstract | Arabidopsis thaliana | TAG content analysis in suc5 mutants | A gene encoding a transporter that facilitates the movement of sucrose and biotin. | NaN | The buildup of triacylglycerols in plant tissues, important for energy storage. | NaN | gene | phenotype | SUCROSE TRANSPORTER 5 | Triacylglycerol accumulation | affect | NaN | NaN |
| SUC5 protein(s) | gene | represents | sucrose/H+ symporter | protein | BIO2 | 23031218 | 23031218_abstract | Arabidopsis thaliana | Functional analysis of SUC5 protein | Proteins encoded by the SUC5 gene, responsible for transporting biotin and sucrose. | NaN | A protein that facilitates the co-transport of sucrose and protons across membranes. | NaN | gene identifier | protein | (ATSUC5, SUC5, AT1G71890) | sucrose/H+ symporter | represents | (ATSUC5, SUC5, AT1G71890) | NaN |
| SUC5 | gene | transports | biotin | metabolite | BIO2 | 23031218 | 23031218_abstract | Arabidopsis thaliana | Uptake measurements of radiolabelled biotin in suc5 mutant and wild-type embryos | A gene encoding a sucrose transporter that also transports biotin in Arabidopsis. | NaN | A water-soluble vitamin (Vitamin B7) essential for fatty acid synthesis and metabolism. | NaN | gene identifier | metabolite | (ATSUC5, SUC5, AT1G71890) | biotin | transport | (ATSUC5, SUC5, AT1G71890) | NaN |
| SUC5 | gene | localizes to | plasma membrane | subcellular compartment | BIO2 | 23031218 | 23031218_abstract | Arabidopsis thaliana | Subcellular localization studies of SUC5 protein | A gene encoding a sucrose transporter that also transports biotin in Arabidopsis. | NaN | The biological membrane that separates the interior of a cell from its environment. | NaN | gene identifier | subcellular compartment | (ATSUC5, SUC5, AT1G71890) | plasmamembrane | localizes to | (ATSUC5, SUC5, AT1G71890) | NaN |
| SUC5 gene(s) | gene | is expressed in | developing embryos | organism | BIO2 | 23031218 | 23031218_abstract | Arabidopsis thaliana | Gene expression analysis of SUC5 | Genes encoding the SUC5 protein, involved in biotin and sucrose transport. | NaN | Embryos in the process of growth and differentiation within a plant. | NaN | gene identifier | organism | (ATSUC5, SUC5, AT1G71890) | Developing plant(s) embryos | is expressed in | (ATSUC5, SUC5, AT1G71890) | NaN |
| transport of biotin | metabolite | is impaired in | suc5 mutant embryos | mutant | BIO2 | 23031218 | 23031218_abstract | Arabidopsis thaliana | Uptake measurements of radiolabelled biotin in suc5 embryos | The movement of biotin as a metabolite within plant systems. | NaN | Embryos from plants with mutations in the suc5 gene, affecting development. | NaN | metabolite | gene identifier | transport of biotin | (ATSUC5, SUC5, AT1G71890) embryos | is impaired in | NaN | (ATSUC5, SUC5, AT1G71890) |
| SUC5 | gene | is essential for | delivery of biotin | metabolite | BIO2 | 23031218 | 23031218_abstract | Arabidopsis thaliana | Phenotypic analysis of suc5 mutants under biotin limitation | A gene encoding a sucrose transporter that also transports biotin in Arabidopsis. | NaN | The process of transporting biotin to various tissues in plants. | NaN | gene identifier | metabolite | (ATSUC5, SUC5, AT1G71890) | delivery of biotin | essential for | (ATSUC5, SUC5, AT1G71890) | NaN |
| biotin biosynthesis-defective mutants | mutant | include | bio1 | gene | BIO2 | 23031218 | 23031218_abstract | Arabidopsis thaliana | Genetic analysis of biotin biosynthesis-defective mutants | Mutants with impaired ability to synthesize biotin, affecting growth and development. | NaN | A gene involved in biotin biosynthesis in plants, essential for metabolic functions. | NaN | mutant | gene identifier | biotin biosynthesis-defective mutants | (BIO1, BIO3, AT5G57590) | encompasses | NaN | (BIO1, BIO3, AT5G57590) |
| biotin biosynthesis-defective mutants | mutant | include | BIO2 | gene | BIO2 | 23031218 | 23031218_abstract | Arabidopsis thaliana | Genetic analysis of biotin biosynthesis-defective mutants | Mutants with impaired ability to synthesize biotin, affecting growth and development. | NaN | A gene involved in biotin biosynthesis in plants, essential for metabolic functions. | NaN | mutant | gene identifier | biotin biosynthesis-defective mutants | (BIO2, BIOB, EMB49, AT2G43360) | encompasses | NaN | (BIO2, BIOB, EMB49, AT2G43360) |
Knowledge graph containing only entities with Arabidopsis Gene Identifiers. Transcription factors are indicated.
Download file| source | source type | relationship | target | target type | gene | pubmedID | p_source | species | basis | source_extracted_definition | source_generated_definition | target_extracted_definition | target_generated_definition | source type resolved | target type resolved | source resolved | target resolved | relationship resolved | source gene alias | target gene alias | source_agi | target_agi | source_TF(1/0) | target_TF(1/0) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| suc5.4 | mutant | produce | truncated SUC5 protein(s) | protein | BIO2 | 23031218 | 23031218_results1 | Arabidopsis thaliana | Sequencing and RT-PCR analysis of suc5.4 mutants | A specific mutant of Arabidopsis thaliana with a mutation in the suc5 gene. | NaN | Incomplete forms of the SUC5 protein resulting from genetic mutations. | NaN | gene identifier | gene identifier | (ATSUC5, SUC5, AT1G71890).4 | truncated (ATSUC5, SUC5, AT1G71890) protein(s) | produce | (ATSUC5, SUC5, AT1G71890) | (ATSUC5, SUC5, AT1G71890) | AT1G71890 | AT1G71890 | 0 | 0 |
| suc5.5 | mutant | produce | truncated SUC5 protein(s) | protein | BIO2 | 23031218 | 23031218_results1 | Arabidopsis thaliana | Sequencing and RT-PCR analysis of suc5.5 mutants | A specific mutant of Arabidopsis thaliana with a mutation in the suc5 gene. | NaN | Incomplete forms of the SUC5 protein resulting from genetic mutations. | NaN | gene identifier | gene identifier | (ATSUC5, SUC5, AT1G71890).5 | truncated (ATSUC5, SUC5, AT1G71890) protein(s) | produce | (ATSUC5, SUC5, AT1G71890) | (ATSUC5, SUC5, AT1G71890) | AT1G71890 | AT1G71890 | 0 | 0 |
| bio1.1 | mutant | crossed with | suc5.4 | mutant | BIO2 | 23031218 | 23031218_results1 | Arabidopsis thaliana | Genetic crossing experiments | A specific mutant of Arabidopsis thaliana defective in biotin biosynthesis. | NaN | A specific mutant of Arabidopsis thaliana with a mutation in the suc5 gene. | NaN | gene identifier | gene identifier | (BIO1, BIO3, AT5G57590).1 | (ATSUC5, SUC5, AT1G71890).4 | crossed with | (BIO1, BIO3, AT5G57590) | (ATSUC5, SUC5, AT1G71890) | AT5G57590 | AT1G71890 | 0 | 0 |
| bio2.1 | mutant | crossed with | suc5.5 | mutant | BIO2 | 23031218 | 23031218_results1 | Arabidopsis thaliana | Genetic crossing experiments | A specific mutant of Arabidopsis thaliana defective in biotin biosynthesis. | NaN | A specific mutant of Arabidopsis thaliana with a mutation in the suc5 gene. | NaN | gene identifier | gene identifier | (BIO2, BIOB, EMB49, AT2G43360).1 | (ATSUC5, SUC5, AT1G71890).5 | crossed with | (BIO2, BIOB, EMB49, AT2G43360) | (ATSUC5, SUC5, AT1G71890) | AT2G43360 | AT1G71890 | 0 | 0 |
| SUC9 | gene | resembles | SUC5 | gene | BIO2 | 23031218 | 23031218_discuss1 | Arabidopsis thaliana | Comparative analysis of SUC9 and SUC5 transport kinetics | A gene encoding a sucrose transporter in Arabidopsis thaliana, involved in sugar transport. | NaN | A gene encoding a sucrose transporter that also transports biotin in Arabidopsis. | NaN | gene identifier | gene identifier | (ATSUC9, SUC9, AT5G06170) | (ATSUC5, SUC5, AT1G71890) | resemble | (ATSUC9, SUC9, AT5G06170) | (ATSUC5, SUC5, AT1G71890) | AT5G06170 | AT1G71890 | 0 | 0 |
| SOB5 | gene | was identified as a suppressor of | phyB-4 long-hypocotyl phenotype | phenotype | SOB5 | 29467189 | 29467189_abstract | Arabidopsis thaliana | Genetic screening of activation-tagged mutants in Arabidopsis thaliana | Gene in Arabidopsis thaliana, a member of the SOFL gene family. | NaN | Phenotype resulting from a mutation in the phyB-4 gene. | NaN | gene identifier | gene identifier | (SOB5, AT5G08150) | (HY3, OOP1, PHYB, AT2G18790)-4 long-hypocotyl phenotype | is a suppressor of | (SOB5, AT5G08150) | (HY3, OOP1, PHYB, AT2G18790) | AT5G08150 | AT2G18790 | 0 | 0 |
| AtSOFL1 | gene | conferred similar phenotypes to | sob5-D mutant | mutant | SOB5 | 29467189 | 29467189_abstract | Arabidopsis thaliana | Overexpression studies in transgenic Arabidopsis thaliana lines | Gene in Arabidopsis thaliana, a founding member of the SOFL gene family. | NaN | A specific mutant of Arabidopsis thaliana with altered SOFL expression. | NaN | gene identifier | gene identifier | (ATSOFL1, SOFL1, AT1G26210) | (SOB5, AT5G08150)-D mutant | had same phenotype as | (ATSOFL1, SOFL1, AT1G26210) | (SOB5, AT5G08150) | AT1G26210 | AT5G08150 | 0 | 0 |
| AtSOFL2 | gene | conferred similar phenotypes to | sob5-D mutant | mutant | SOB5 | 29467189 | 29467189_abstract | Arabidopsis thaliana | Overexpression studies in transgenic Arabidopsis thaliana lines | Gene in Arabidopsis thaliana, a founding member of the SOFL gene family. | NaN | A specific mutant of Arabidopsis thaliana with altered SOFL expression. | NaN | gene identifier | gene identifier | (ATSOFL2, SOFL2, AT1G68870) | (SOB5, AT5G08150)-D mutant | had same phenotype as | (ATSOFL2, SOFL2, AT1G68870) | (SOB5, AT5G08150) | AT1G68870 | AT5G08150 | 0 | 0 |
| SOB5 | gene | had | protein(s) sequence At5g08150 | protein | SOB5 | 29467189 | 29467189_intro | NaN | NaN | Gene in Arabidopsis thaliana, a member of the SOFL gene family. | NaN | Amino acid sequence of the SOB5 protein in Arabidopsis thaliana. | NaN | gene identifier | gene identifier | (SOB5, AT5G08150) | protein(s) sequence (SOB5, AT5G08150) | had | (SOB5, AT5G08150) | (SOB5, AT5G08150) | AT5G08150 | AT5G08150 | 0 | 0 |
| AtSOFL1 | gene | had | protein(s) sequence At1g26210 | protein | SOB5 | 29467189 | 29467189_intro | NaN | NaN | Gene in Arabidopsis thaliana, a founding member of the SOFL gene family. | NaN | Amino acid sequence of the AtSOFL1 protein in Arabidopsis thaliana. | NaN | gene identifier | gene identifier | (ATSOFL1, SOFL1, AT1G26210) | protein(s) sequence (ATSOFL1, SOFL1, AT1G26210) | had | (ATSOFL1, SOFL1, AT1G26210) | (ATSOFL1, SOFL1, AT1G26210) | AT1G26210 | AT1G26210 | 0 | 0 |
